Publications

2015

Jaing CJ, Thissen JB, Gardner SN, McLoughlin KS, Hullinger PJ, Monday NA, Niederwerder MC, Rowland RRR. Application of a pathogen microarray for the analysis of viruses and bacteria in clinical diagnostic samples from pigs, J Vet Diagn Invest, 27(3), in press, May 2015.

2014

Be N, Thissen J, Fofanov V, Allen J, Rojas M, Golovko G, Fofanov Y, Koshinsky H, Jaing C. Metagenomic Analysis of the Airborne Environment in Urban Spaces. 2014. Microbial Ecology:1-10.  http://link.springer.com/article/10.1007/s00248-014-0517-z

Thissen JB, McLoughlin K, Gardner S, Gu P, Mabery S, Slezak T, Jaing C Analysis of sensitivity and rapid hybridization of a multiplexed Microbial Detection Microarray.J Virol Methods. 2014 Jun;201:73-8. doi: 10.1016/j.jviromet.2014.01.024. Epub 2014 Mar 3.

Be N, Allen J, Brown T, Chromy B, Eldridge A, Luciw P, Forsberg J, Kirkup B, Elster E, and Jaing C. Molecular profiling of combat wound infection through microbial detection microarray and next-generation sequencing. Journal of Clinical Microbiology.2014.  http://jcm.asm.org/content/early/2014/05/08/JCM.00556-14.abstract.

Wolfe DN, Heppner DG, Gardner SN, Jaing C, Dupuy LC, Schmaljohn CS, Carlton K: Current Strategic Thinking for the Development of a Trivalent Alphavirus Vaccine for Human Use. The American Journal of Tropical Medicine and Hygiene 2014. DOI: 10.4269/ajtmh.14-0055

Gardner SN, Jaing CJ, Elsheikh MM, Pena J, Hysom DA, Borucki MK. Multiplex degenerate primer design for targeted whole genome amplification of many viral genomes, Advances in Bioinformatics, 2014, http://dx.doi.org/10.1155/2014/101894

Devault, A.M., McLoughlin, K., Jaing, C., Gardner, S., Porter, T.M., Enk, J., Thissen, J., Allen, J., Borucki, M., DeWitte, S.N., Dhody, A.N., Poinar, H.N. 2014. Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array. Scientific Reports. doi:10.1038/srep04245

Peña, J., Plante, J., Carillo, A., Roberts, K., Smith, J., Juelich, T., Beasley, D., Freiberg, A., Labute, M., Naraghi-Arani, P. 2014. Multiplexed Digital mRNA Profiling of the Inflammatory Response in the West Nile Swiss Webster Mouse Model. PLoS Neglected Tropical Diseases. doi:10.1371/journal.pntd.0003216

Thissen JB, McLoughlin K, Gardner S, Gu P, Mabery S, Slezak T, Jaing C. 2014. Analysis of sensitivity and rapid hybridization of a multiplexed Microbial Detection Microarray. J Virol Methods http://dx.doi.org/10.1016/j.jviromet.2014.01.024

Hewitson L, Thissen JB, Gardner SN, McLoughlin KS, Glausser MK, Jaing CJ. 2014. Screening of Viral Pathogens from Pediatric Ileal Tissue Samples after Vaccination. Advances in Virology 2014:10. http://dx.doi.org/10.1155/2014/720585

2013

Gardner SN, Thissen JB, McLoughlin KS, Slezak T, Jaing CJ. Optimizing SNP microarray probe design for high accuracy microbial genotyping.  2013. J Virol Methods 94:303-310. http://dx.doi.org/10.1016/j.mimet.2013.07.006

Paradžik M, Bučević-Popović V, Šitum M, Jaing C, Degoricija M, McLoughlin K, Ismail S, Punda-Polić V, Terzić J. Association of Kaposi’s sarcoma-associated herpesvirus (KSHV) with bladder cancer in Croatian patients. 2013. Tumor Biology: 1-6. http://dx.doi.org/10.1007/s13277-013-1079-2

Chromy BA, Eldridge A, Forsberg J, Brown TS, Kirkup BC, Jaing C, Be NA, Elster E, Luciw PA. 2013. Wound outcome in combat injuries is associated with a unique set of protein biomarkers. Journal of Translational Medicine 11(1):281. http://www.translational-medicine.com/content/11/1/281

Gardner SN, Jaing CJ. Bioinformatics for microbial genotyping of equine encephalitis viruses, orthopoxviruses, and hantaviruses. J Virol Methods. 2013. 193:112-120.http://dx.doi.org/10.1016/j.jviromet.2013.04.019

Corzett TH, Eldridge AM, Knaack JS, Corzett CH, McCutchen-Maloney SL, Chromy BA. (2013) Multivariate Statistical Analysis of Diverse Strains of Yersinia pestis by Comparative Proteomics. J Proteomics Bioinform., 6:202-208.     

2012

Eithon Cadag, Elizabeth Vitalis, ,Kristin P Lennox,, Carol L Ecale Zhou,. Adam T Zemla Computational analysis of pathogen-borne metallo β-lactamases reveals discriminating structural features between B1 types BMC Res Notes 2012 14;5:96. Epub 2012 Feb 14.

Dietrich Dehlinger, Lynn Suer, Maher Elsheikh, José Peña, Pejman Naraghi-Arani. Dye Free Automated Cell Counting and Analysis. (2012) Biotechnol Bioeng. doi: 10.1002/bit.24757.
 
D.A. Hysom, P. Naraghi-Arani, M. El Sheikh, A.C. Carrillo, P.L. Williams, S.N. Gardner. “Skip the Alignment: Degenerate, Multiplex Primer and Probe Design Using K-mer Matching Instead of Alignments., 2012 Journal  PLoS ONE.  PLoS ONE 7(4): e345600.

2011

Erlandsson L, Rosenstierne MW, McLoughlin K, Jaing C, Fomsgaard A. The Microbial Detection Array Combined with Random Phi29-Amplification Used as a Diagnostic Tool for Virus Detection in Clinical Samples.  PLoS ONE 6(8): e22631. doi:10.1371/journal.pone.0022631, 2011.

2010

Victoria JG, Wang C, Jones MS, Jaing C, McLoughlin K, Gardner S and Delwart EL. Viral nucleic acids in live-attenuated vaccines: detection of minority variants and an adventitious virus.  J. Virol. 84: 6033-40, http://jvi.asm.org/cgi/reprint/84/12/6033, 2010.

Gardner SN, Jaing CJ, McLoughlin KS, Slezak TR. A Microbial Detection Array (MDA) for Viral and Bacterial Detection, BMC Genomics  11:668doi:10.1186/1471-2164-11-668, http://www.biomedcentral.com/1471-2164/11/668, 2010.

Jaing C, Gardner S, McLoughlin K, Mulakken N, Alegria-Hartman M, Banda P, Williams P, Gu P, Wagner M, Manohar C, and Slezak T. A functional gene array for detection of bacterial virulence elements. PLoS ONE, http://www.plosone.org/doi/pone.0002163, 2008.